Pat Gunn
Pat Gunn
@kushalkolar This looks good to me; is there any chance this might break anything with Mesmerize?
@ethanbb Ah, yes. Good spot. I've been trying to remove non-toplevel imports when I find them. You want to do it or shall I?
Closing this; we've fixed a number of deprecations since this was opened.
By local imports you mean within function bodies? We definitely should get rid of those if we can; I thought I had cleared out most of the warnings though, unless...
It might; actually, I'll just adjust the imports in dev; it should be a very safe change.
Thanks for providing a download link; we'll give it a look. I'm hoping this is something we can fix with different parameters.
Playing with this a bit on a branch: https://github.com/flatironinstitute/CaImAn/commit/1d4cfe60c7c1911525ae728fd9e1eba64da05cc8
The "c" variable that setup_cluster() returns doesn't seem to be used by any demos; it's unclear if it ever did, or if it's just returned because it needs to remain...
In a way this hopes to be the counterpart of CNMFParams; instead of holding the scientific params of the run of the code, it holds the computer/cluster-specific type "how" of...
Exploring on dev_z5py_to_zarr branch