Padraig Gleeson
Padraig Gleeson
@balicea Could you possibly add the names of your current/previous GSoC students to the appropriate section in http://openworm.org/supporters.html? I think most of the recent students have been with your projects,...
Thanks for that @balicea! Looks good to me as it is, but the next step might be to make a dedicated page for GSoC, perhaps with links to some of...
Replaced by #186
FYI this page: https://github.com/OpenSourceBrain/NWBShowcase/blob/master/README.md has pointers to example scripts (all Python so far) for converting specific datasets to NWB. While it does so far cover ABF/Igor Pro/MATLAB mat to NWB,...
Sure, add that if you like. Note also there's a method in pyNeuroML here: https://github.com/NeuroML/pyNeuroML/blob/master/pyneuroml/pynml.py#L349, which I use more often, which can handle the include statements inside the NML file,...
Todo: Retest the arraymorph functionality and add example script to show plot of time to save for arraymorph vs "standard" morphology
Have a look here: https://github.com/NeuralEnsemble/neuroConstruct/blob/d94b86afbc88e1ccafcfc0558649d3d194aa8bb6/src/ucl/physiol/neuroconstruct/cell/converters/SWCMorphReader.java#L451-L488 Only point types 0-7 are defined for the neuroConstruct import. Not sure if this is a limitation in the spec itself (documentation on SWC is...
So the problem is a bit of a tricky one... the nC import of SWC breaks the list of points into unbranched **Sections** which are the list of points between...
So FYI for these options: 1) You would need to do this 2) I would probably need to, but it's not on the todo list for now... 3) You could...
@njhulst Ok. If you do plan to go the SWC->NML route via Python (option 3), please do consider making a general purpose one that can go in the pyNeuroML repo....