pgaudet
pgaudet
I was proposing we have a report for each source (longer term)
It looks like http://current.geneontology.org/reports/rgd-summary.txt is not behaving correctly? I think there were two kinds of scripts, one with owl-tools and one with ontobio, and some rules were implemented in both...
It's odd because these .txt files are not available in our files: http://current.geneontology.org/reports/index.html @kltm Should they even be generated? Indeed gorule-0000014 is deprecated, and not shown in other reports. Thanks,...
Thanks for the clarification. Looks like these files are out of date compared with the current workflow (since this error does not appear in other reports). @tutajm Can you use...
According to wikipedia, centrosomes evolved in metazoa: https://simple.wikipedia.org/wiki/Centrosome However centrosomes have been described in Dicty: http://www.ncbi.nlm.nih.gov/pubmed/15548420 Thanks, Pascale
Hi @cmungall It seems the documentation is not super clear. GPAD 2. doc is here: https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md I had understood that since GPAD2.0 does not have the equivalent of Column 17,...
Not shown in go-rules reports, so this is OK for me - @kltm Do you want a 'cleaner' solution to this?
Working as needed for curators. We can revisit the system if needed.
@cmungall Are you suggesting a 4th option in which we'd manually 'repair' the GAF after the pipeline products are generated?
@sierra-moxon @kltm has there been any movement on this?