pgaudet
pgaudet
This entity needs to be in your GPI. Are the mRNAs in RNACentral? Note that for transcription factors we had decided to use the same entity as we use for...
Inputs and outputs are still entities. Like ChEBI.
> I mean as annotation objects ( because they have no activity) What I meant is that regardless of whether you use them as enablers or inputs/outputs, the load is...
I think this should be working after this week's Noctua outage, right @kltm ?
https://github.com/geneontology/go-ontology/issues/21143 This was my proposal last fall https://github.com/geneontology/go-ontology/issues/21143#issuecomment-2252232694 We did discuss it on an [ontology call](https://wiki.geneontology.org/Ontology_meeting_2024-11-18), but there was no resolution.
@ValWood What MF would you annotate the ribosome to ?
the option would be ['information biomacromolecule' ](https://www.ebi.ac.uk/chebi/chebiOntology.do?chebiId=CHEBI:33695) Can you use that for now?
June 2024 GO release file has no col 17 information: > !gaf-version: 2.2 ! !generated-by: GOC ! !date-generated: 2024-06-19T02:24 ! UniProtKB A0A024RBG1 NUDT4B enables GO:0003723 GO_REF:0000043 IEA UniProtKB-KW:KW-0694 F Diphosphoinositol...
Oh ! I didn't see that yesterday. Looks like the GOA source file has data in Col 17 everywhere: > !gaf-version: 2.2 ! !date-generated: 2024-06-20 12:51 !generated-by: UniProt !go-version: http://purl.obolibrary.org/obo/go/releases/2024-06-19/extensions/go-plus.owl...
Discussing with Alex. This is not very critical, we can leave the same data as in col 1/2.