Peter Kruczkiewicz

Thanks @djcooke for the quick response and workaround! Yes, that should work for us. We've been currently just adding a note attached to the affected runs. With your workaround, we...

Thanks @djcooke for clarifying!

Sounds good! Thanks for the recommendation. We'll do that from now on.

Thank you for clarifying! We'll look into it on our end to link things up. The type of targeted sequencing we are frequently doing is PCR amplification of RNA viruses...

Hi @drpatelh, Several of the samples were difficult to sequence with very high Ct values, so we ended up trying a few different methods (ARTIC V4, 1200bp, FG) on Illumina...

Hi @drpatelh, Thanks for looking into this so quickly! I was hoping there was a SnpEff option to get the correct AA coordinates for ORF1b mutations. Unfortunately, the updated GFF...

It's also interesting to note that [GISAID/CoVsurver](https://www.gisaid.org/epiflu-applications/covsurver-mutations-app/) reports AA substitutions for the component NSPs of ORF1ab/ORF1a, e.g. ``` N_G215C NSP3_A1711V Spike_P809S Spike_T95I N_D63G NS7a_E91D ... Spike_D614G NSP4_V167L Spike_L452R ``` This...

Hi @tzuni I'm not sure why the package isn't showing up under Package Control, but in the mean time you can install the package by adding this Github repo as...

Thanks for reporting this issue @gabefoley and verifying it @yuxuth I did try fixing it a while ago when I noticed it didn't work as expected on Linux. I'll take...

@BiocondaBot please fetch artifacts