Peter Zeng

Hi @vadimnazarov thanks for your answer. After my post I used the exact same method to fix the ordering. However, the problem I have is with the Relative Abundance figures...

`repClonality(immdata.opc.bcr$data, .method = "homeo", .clone.types = c(Small = .001, Medium = .01, Large = .1, Hyperexpanded = 10)) %>% vis(., .by=c("cluster_order"),.meta=immdata.opc.bcr$meta)+ labs(title = "",subtitle = "") + theme_classic()+ theme(axis.text.x=element_text(angle=45, hjust=1),legend.position...

Oh i did find a crude way around this problem. It seems that the order is based on default alphabetical order, so i just made a new column in .meta...

Replacing the NA's still throws error `Error in MASS::isoMDS(.data, k = 2, trace = F) : zero or negative distance between objects 1 and 2`

@vadimnazarov no problem. I am a huge fan of the package and appreciate your help 👍

I had the same problem running snakemake 7.3.8 (installed via pip) on my slurm cluster. On my cluster, HOME directory is not modifiable on the compute nodes. I solved the...

@ctsa are there any updates in Strelka to allow multiregion calling?