looper
looper copied to clipboard
pepkit
A job submitter for Portable Encapsulated Projects
When configuring through a PEP, we get this warning: > This PEP configures looper through the project config. This approach is deprecated and will be removed in future versions. Please...
It would be nice if the looper summary results page could toggle between showing derived attribute keys and actual derived attributes. For any attributes listed as `derived_attributes`, the `Sample` object...
This issue is coauthored by @zz1874. `looper` is a CLI tool that often runs on the front node of a HPC cluster, so jobs can be submitted to Slurm /...
A collection of problems I ran into when trying to use looper for a project: - [x] #417 - [x] #418 - [x] #421 - [x] #419 - [x] #420...
Awhile ago I ran into an issue using looper in an environment that wasn't running on bash. This solved the problem. I'm not sure this is what we should do,...
Hi, I am newbie where I would need to formulate a solution for bigQuery processing using Airflow and Looper. I do not know the full details yet but this project...
We recently added pre-submission hooks (#285). What about post-submission hooks to check on something? In #289 @afrendeiro brought up the idea that we need some more powerful checks on submission....
Should we print out the full command template when something is missing? In the case of refgenie, I have 100 samples, which I intend to not submit, which are giving...
What's the sample yaml name referred to in the command template? We don't list it in the docs... is it `looper.sample_yaml` ?
I saw that divvy is being used to generate the .sub files for a looper job submission. However, I could not easily find anywhere in the vignettes describing how to...
