Mario Rodríguez

Download of sourmash and vibrant databases always fail

4

Command used: ``` nextflow run replikation/What_the_Phage -r v1.2.1 --setup -profile local,singularity -work-dir ./work --cachedir ./singularity_images ``` I have tried more than 10 times, deleting folders, and caching dirs, and it...

Update to React 18/19?

1

Hi Theo, Thanks so much for your work on Taxonium — it's a really fantastic tool. I was wondering if there are any plans to update the `taxonium-component` to support...

Speed up improvements

2

Hi, I have a few simple suggestions that could improve eggNOG-mapper for large-scale use. I've been experimenting a bit with them and it should be easy to implement **GPU support...

Support for non-Refseq genes

1

Hi, first of all thanks for this amazing tool, it's making bionformaticians lives way easier! I'm currently using NCBI datasets (`datasets download gene accession`) to download proteins from Bacteria and...

Running Muscle3D with ensembles

3

Hi! I would like to run Muscle 3D with the ensembles method. Is there a way to do it in the current version? I'm trying to run: `muscle -super7 structs.mega...

Error when using -super5 with Muscle3D

7

Hi Robert! First of all, thanks you so much for your time dedicated to software development and making bioinformaticians lives easier! I'm trying to aling around 90k PDBs from Alphafold...