Mario Rodríguez

Hi Mike! Thanks you very much for your suppafast reply! Doing it that way, It worked! :smiley: I noticed now that I was following the instructions for the install in...

I've made a pull request to allow to use GFF/Protein FASTA input instead of Prodigal, but it still needs the nucleotide FASTA for CRISPR arrays identification. For now it is...

Hi @Yomguithereal I'm currently trying to use a pre-computed layout positions in ipysigma, but the nodes are not showing at all. What is the format that the layout mapping should...

Ok, reading the code I found the way, in case it can be useful for someone: The actual format of the layout mapping should be: ``` layout = { "node1":...

Hey @rcedgar, thank you so much for the super-fast reply! Sorry, I completely missed that part of the README. I think I was too excited to try it out and...

Hi @rcedgar I tried again following these commands: `reseek -convert second_round/ -bca second_round.bca` `reseek -pdb2mega second_round.bca -output second_round.mega` `reseek -distmx second_round.bca -output second_round.distmx -verysensitive` `muscle -super7 second_round.mega -distmxin second_round.distmx -reseek...

Hi @rcedgar, I've checked and the distance matrix `second_round.distmx` is completely empty, it is only showing the IDs of the proteins. I will investigate more in depth what can be...

Yes, it was indeed an issue with the conda build. The same happened to other users Just as a comment in case anyone is facing the same, the latest version...

Hi Robert! Thanks for your reply! Is there a way to replicate the ensemble diversification explicitly (the exact perturbations, random seeds, guide-tree tweaks, or other settings that -diversified uses) so...