pdhrati02

Hi, I am using abricate on metagenome assembled genomes (MAGs). I used abricate with default parameters, specifying just the input, output and database to use. In the end, I combined...

selecting top n from clusters in heatmap - visualize top n

9

Hi all, I made a heatmap using complex heatmap and it is clustered by rows and column. There being several row names the heatmap is dense and I wish to...

Hi all, I am trying to add significance stars to a heatmap, so essentially involving multiple group comparisons for many variables. I am able to get a overall p value...

Hi, Thank you for the CARD database, it is very helpful. I have one question: I am using the software version and the output we get is xyz ARF present...

Kruskal.test vs wilcox.test in compare_means

1

Hi, in my dataset I have 3 groups and 10 classes for which I wish to compare the abundance per class between groups. An example is of the data will...

Hi, I used pip install git+http://github.com/smdabdoub/kraken-biom.git Following which I tried kraken-biom on 2 samples for trial: kraken-biom C1C_S92_krak_out.txt C1T1_S39_krak_out.txt and also kraken-biom C1C_S92_krakenreport.txt C1T1_S39_krakenreport.txt In both cases I ended up...