Paul-Evolution

Hi, I am learning BEAST2 these days. I figured out that the input genes has to be housekeeping gene. So I am trying to use all protein codeing gene in...

So many duplications.

20

Hello, I recently performed a de novo genome assembly using HiFiasm. And I have Hifi sequencing data. First, thank you let us use this wonderful tool. But when i run...

No peak.

1

Hello, from the log file, I could not determine the peak value for --hom-cov. [nohup.txt](https://github.com/chhylp123/hifiasm/files/9146666/nohup.txt) And this is the code that i used. `$hifiasm -o hifiasm -t 80 --hg-size 1.9g...

does HI-C integration assembly accepts Omni-C data as an input data?

1

Hi, I am trying to generate chromosomal level scaffolds using hifiasm with Hi-C integration. Does hifiasm accepts omni-C reads as an input instead of Hi-C data? Thanks.

the number of samples

1

Hello, I have questions about the samples that may impact the assembly result. Since my sample is relatively small, I had to pool them up for HiFi sequencing to extract...

Genome examples empty?

18

Hi I am trying to predict gene structure using Finder. And it seems this tool is better than PASA, MAKER,,, So I am planning to get used to this tool....

Hello PSMC developer, I am encountering two minor issue that I need assistance with. I have short-read data from Illumina with a coverage of 100x and a reference genome assembled...