Partha Sarathi Tripathy
Partha Sarathi Tripathy
Dear Wouter, I am getting the following error. The version of methplotlib I am using is **0.13.1**. Please help. methplotlib -m methylation_calls_CpG_sm1.tsv.gz methylation_frequency_sm1.tsv.gz -n calls frequencies -w mtDNA:1-16,626 -g /cluster/projects/nn9337k/as1_nanopolish/all_context/sequence.sorted.gtf.gz...
modbamtools plot -r mtDNA:1-16626 --gtf /cluster/projects/nn9337k/as1_nanopolish/all_context/sequence.sorted.gtf.gz --out . --prefix unmethylated --samples unmethylated --track-titles Genes unmethylated.bam Traceback (most recent call last): File "/cluster/projects/nn9337k/anaconda/envs/modbamtools/bin/modbamtools", line 8, in sys.exit(cli()) File "/cluster/projects/nn9337k/anaconda/envs/modbamtools/lib/python3.8/site-packages/click/core.py", line 1130,...
I want run hemi-methylation in 5mC context... modkit pileup-hemi -o ftr.bed --motif C 0 -r mtDNA.fasta -t 32 --no-filtering ftr.bam... i am getting error as Error! motif must be palindromic...