Patrick Kunzmann

Hi, unfortunately there is currently no way to provide custom heights to symbols in a sequence logo. The only way is modifying the `symbols` attribute in the input `SequenceProfile`, but...

Thanks for spotting this. I suspect that the `altloc` filtering is the problem here: By default only atoms belonging to a single *altloc* is selected for each residue. If `author_fields=True`...

Hi, I am not sure how necessary an additional annotation array (e.g. `state_id`) is, since different chains with the same chain ID can be distinguished with *Biotite*'s chain level utilities...

I checked `7DFP` and can confirm the problem. Unfortunately, I see no simple way to detect that it is the same chain here. However, setting `use_author_fields=False` in `get_structure()` or `get_assembly()`...

Hi, thank you for adding the interface. Initially, I have two requests: 1. Could you give a short description in the PR, what the interfaced software does? 2. Via a...

Basically every interface for publicly available and well documented software that works on sequence or structure data is interesting for `biotite.application`. I will have a look on your PR and...

Hi, this sounds like a useful functionality to have. I think at least for `"group_by_return_type" : "representatives"`, this is easy to integrate into the existing `search()` function, since the type...

To find a good heuristic might be quite challenging, but I will start with an optional `use_cell_list` parameter.

This PR should fix the issue for the `rdf()` function. All other currently implemented functions, that use a `CellList` always need a large number of pairwise distances, so a *brute-force*...

Hi. Unfortunately, the UniProt REST API does not support this, as far as I know. You could try the `"modified"` and `"created"` query fields (https://www.uniprot.org/help/query-fields) to find entries that have...