Patrick Kunzmann
Patrick Kunzmann
I found another change in the new API: Some field names have changed or have been added (https://www.uniprot.org/help/query-fields). This includes for example `taxonomy_name`. If such field is selected for a...
You are right, this is definitely something *Biotite* should support. This involves not only the *PDB* format but all formats supported by *Biotite*. However, solving this issue requires quite a...
Thanks for the PR. Prior to review, could you resolve the conflicts with the upstream branch?
This sounds like a good solution to me. Using the `_chem_comp.type` should give a comprehensive list of amino acids. I am also in favor of the `filter_canonical_xxx()` versions. @edikedik Would...
> 3\. Indeed, I suspect you planned it as such, as you rely on it in the `filter_backbone` @edikedik You are correct. This could be problematic, if e.g. dihedral angles...
I think `filter_polymer()` has a good use case, especially if a certain minimum length is required. Could you open a PR? Did you already test this function, especially whether `np.split()`...
I think there is no need to hurry. @tomtomhdx Would you also like to implement `filter_carbohydrates()`? Ivan Reveguk ***@***.***> schrieb am Sa., 17. Sep. 2022, 14:40: > I think filter_polymer()...
Thank you, removing the line in `.gitignore` solves the problem. Should I keep the issue open, until the upstream issue is fixed?
As no proper solution is in sight, I will close this issue as *wontfix*.
Not yet. Since there seems to be some need for this feature, I would implement it in the upcoming week.