Oliver Ruebel
Oliver Ruebel
**This PR is a draft and has been created to ease sharing and discussion. It is not intended for active use.** ## Motivation Integrate HDMF ZarrIO backend with PyNWB and...
The description of the software architecture as part of [overview_software_architecture.rst](https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/docs/source/overview_software_architecture.rst) is outdated. Most of the current text refers to details of HDMF. The page should be updated to discuss the...
When cloning PyNWB from git, users sometimes forget to include the ``--recurse-submodules`` parameter on check-out. This in turn leads to a ``KeyError: "'core' not a namespace"`` in HDMF because the...
It would be useful to illustrate in the [advanced I/O tutorial on H5DataIO](https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/docs/gallery/advanced_io/h5dataio.py) how users can use custom other compression filters (e.g., provided by https://pypi.org/project/hdf5plugin/) ## Checklist - [X] Have...
## 2) Feature Request A couple of issues recently have asked about linking data. We have a tutorial on modular storage right now, we should extend it or add a...
#1350 added detailed docs for creating extensions. There is currently l substantial overlap between the new extensions docs and the extension tutorial in the sphinx gallery. Since the docs focus...
It would be great to add a section ``7_sharing_extensions`` to the extension docs at https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/docs/source/extensions_tutorial/extensions_tutorial_home.rst to discuss publishing the extension in the NDX catalog. In the spirit of the extension...
This issue was originally reported by @lvsltz in https://github.com/oruebel/ndx-icephys-meta/issues/66. This issue has been copied here since it will need to be addressed in PyNWB. The stimuli table (`IntracellularStimuliTable`) (and co.)...
## 2) Feature Request Currently the ordering of dimensions described in the schema is in many cases not listed in the documentation. E.g., for ``ElectricalSeries.data`` we should add to the...
This PR is in response to https://github.com/hdmf-dev/hdmf/issues/665 which identified an issue where conversion of the icephys metadata tables to a hierarchical dataframe fails if a table contains a VectorIndex column....