Oliver Ruebel
Oliver Ruebel
Related issues: - NWB Schema: https://github.com/NeurodataWithoutBorders/nwb-schema/issues/1 - PyNWB issue with discussion from previous hackathon: https://github.com/NeurodataWithoutBorders/pynwb/issues/513 - Related use case: https://github.com/NeurodataWithoutBorders/nwb-schema/issues/477 A solution for this is currently being developed in HDMF:...
For this sort of iterative approach, where you need to repeatedly update or remove data, I think a more modular approach to storing the data from your pipeline could help(see...
> Do all HDMF containers have a .data attribute? No that is not the case. The attributes depend on the schema and how they are mapped to class attributes. E.g.,...
Just a few thoughts. I think validation of this sort of thing may appear at there different stages in PyNWB: 1. When creating a container class (or modifying attributes of...
A related issue is https://github.com/NeurodataWithoutBorders/matnwb/issues/305 Checking that ``colnames`` in ``DynamicTable`` matches the names of the ``VectorData`` columns. PyNWB autogenerates this dataset so this should not be an issue when creating...
@rly @bendichter @CodyCBakerPhD thoughts?
I think this is likely a different problem, since the files for these tests are not being downloaded from DANDI but are actually included in the PyNWB repo itself here...
Implementing this feature will require: - When setting data one will need to automatically determine appropriate "None" values for all columns of the corresponding table to fill in the row....
I don't think the ``h5repack`` utility https://support.hdfgroup.org/HDF5/doc/RM/Tools.html#Tools-Repack can quite do this out-of-the-box, but I think it can still be useful here. I think a simple solution would be to: 1....
@CodyCBakerPhD the traceback doesn't seem to include the call to validate itself so just to clarify. You are calling: https://github.com/NeurodataWithoutBorders/pynwb/blob/2973aeb5bd72c2cda85ac87eddbabed7d2da54e8/src/pynwb/__init__.py#L189-L198 1. If understand your request correctly, then you would like...