COBRA.tutorials
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opencobra
Repository of tutorials for The COBRA Toolbox
Introducing the Nutrition Algorithm Walkthrough to COBRA Toolbox
I've been trying to run the tutorial_mgPipe.m, but after the pan-models are created, I get the following error: Error using addMultipleReactions (line 162) Subscripted assignment dimension mismatch. Error in addMicrobeCommunityBiomass...
Hi! I tried to run the `tutorial_atomicallyResolveReconstruction.mlx` tutorial on MATLAB online and I got the following error: ``` Error using readtable (line 498) Unable to open file '/MATLAB Drive/COBRA/fork-cobratoolbox/tutorials/analysis/atomicallyResolveReconstruction/metaboliteIds.xlsx as...
Dear all, I want to find some interventions applied to a strain by using optforce.The model I used is iJO1366 of E.coli,and the objective is trptophan.It is successful.But when I...
Hi there is not any readCbMap function in may cobra toolbox. Is there any problem in installation or any alternative command? Samira
Hi all, when I run the optforce, I meet the followed error. Could you help me find the reason? The code and error is as followed: constrOpt = struct('rxnList', {{'r_1714',...
Hi, I have followed the steps as per the tutorial to create **iMAT reconstruction of the ecoli_core_model.mat**. The output is very different from what is provided in the documentation. I...
- Add file Analysis/ICON-GEMs/tutorial_Icongems - Add file Analysis/ICON-GEMs/gene_exp.csv - Add file Analysis/ICON-GEMs/ecoli_core_model.mat
The Uniform Sampling PDF tutorial is missing GitHub Directory: https://github.com/opencobra/COBRA.tutorials/tree/0d5becf7171844e53d3d43437035917a2bd9cc61/analysis/uniformSampling
### **Description:** This PR introduces a comprehensive tutorial for the COBRArrow MATLAB API. The tutorial is designed to guide users through the key functionalities of COBRArrow, including environment setup, sending...
