ollenordesjo

Hi @myxotheles, Apologies for late reply, we're phasing out duplex-tools in favour of all batteries included in dorado. Sorry to hear you're getting issues, would be excellent to know which...

Hi @avilella, sorry for the delay in replying Yes, that's correct, by default it will go to what the `--output_dir` is set to. The reason for this is to keep...

Hi @rocpv1977! Thanks for the question. You're definitely on the right track. You are expected to give it the output from `seqkit bam` on a bam file that does not...

Hi @itslittman, thanks for the question. To me it looks like the trailing `None` is quite suspicious, it would be great if it's possible to see if that's part of...

Hi @itslittman, Yes, it does indeed look like some tags have been removed: `qs:i:12 du:f:1.24775 ns:i:4991 ts:i:10 mx:i:2 ch:i:8 st:Z:2023-04-12T23:10:51.660+00:00 rn:i:12959 f5:Z:FAW60540_pass_a6ad0ce3_11d41050_402.pod5 sm:f:92.951 sd:f:27.937 sv:Z:quantile MM:Z:C+h?;C+m?; ML:B:C` Having a closer...

Hi @itslittman, sorry for late reply. The easiest way to remove it from files you already have is probably this (which will remove -> from the sam file) ``` sed...

Hi @itslittman, sorry for responding earlier. Not sure if the samtools version could be the issue. Which version have you tried? If you're able to upload the sam that is...

Yep, samtools version shouldn't be the problem then. If you send an email to me on [email protected] I can send you a link where you can upload it

Ah, so sorry! It's olle [dot] [email protected]

Hi @mp15, thanks for raising this. It's likely that this is a new issue coming from a change in how the random module works. Can you try with python 3.10...