Oliver Hofmann
Oliver Hofmann
We are currently generating this list for cancer samples (individual patients and cohorts). Give us a few weeks to finalise.
I don't think we'll be looking for all-variants-in-all-cases regularly. All variants at a given location, maybe (which will rarely be larger than a gene), and that's mostly for context. Could...
Just a +1 from me. Being able to run this at scale would help immensely to streamline our current workflow.
> It would be very useful if one of the main data archives could trawl their headers to give us some guidance here. Is it purely 1 single project that...
> That said, if it's that dominant in the wild already, then the ship has sailed and the horse has bolted, so I don't see any value in strictly enforcing...
Would be interested in this as well, given that the original fix is back from 2022.
I am not sure I agree with the 'without public discussion' part; we had two release candidates of 4.5 out for several months and requested comments; notes went out via...
I've been reading up on https://adr.github.io/ after this morning's discussion.
I would prefer to use the `@SC` option, but it seems unlikely that we'll see any changes applied to `htsjdk`, at least in the foreseeable future. At which point this...