ofleitas

output graph doesn't display any of the selected genes

2

Hello I am trying to highlight some genes in the volcano plot. However, the output graph doesn't display any of the selected genes. This is the code: p

Error in getEAWP(object)

6

Hello I'm trying to analyze a label-free data with DEqMS but I get an error when I apply lmFit. Error in getEAWP(object) : Data object doesn't contain numeric expression values...

`undefined entity` while reading mzIdentML file

7

Hello I am trying to run ms2rescore but get the following error : ``` Reading PSMs from file... Reading PSMs from PSM file (1/1): `C:/Users/ofm83/OneDrive/Documents/Megaphobema_perterklaasi/output_PeptideShaker/Megaphobema_perterklaasi.mzid`... undefined entity: line 35, column...

ModuleNotFoundError: No module named '_sysconfigdata_x86_64_conda_linux_gnu'

7

Hello I am trying to run macrel but I got the follow error: # Sequence Data: seqnum=7183;seqlen=1609;seqhdr="k127_22397 flag=3 multi=7.0047 len=1609" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="11|Candidatus_Amoebophilus_asiaticus_5a2|B|35.0|11|0";gc_cont=35.00;transl_table=11;uses_sd=0 >1_302_409_- Traceback (most recent call last):...

No such file or directory: './data/metadata/last_release.json'

2

Hello I am trying to run deepgoplus but I am getting this error 2025-01-15 06:45:59.802659: W tensorflow/stream_executor/platform/default/dso_loader.cc:59] Could not load dynamic library 'libcudart.so.10.1'; dlerror: libcudart.so.10.1: cannot open shared object file:...

comparison of peptide groups

1

Hello I am trying to compare different sets of peptides (8-50aa) using one of them as a reference. My interest is to detect the peptides that are common between the...