ofleitas

Hello I replaced lab = rownames(X) by lab=X$gene_ID, that worked for me. On Sat, Apr 8, 2023 at 12:04 PM hmlopezbertoni ***@***.***> wrote: > I'm having the same issue, were...

Hello Yafeng/Deqms I reviewed the data frame and one of the samples had intensity values such as NA. I deleted that sample and tried to do the analysis again but...

Thank you. I am attaching the files. On Sun, Sep 11, 2022 at 12:30 AM yafeng ***@***.***> wrote: > OK, you can share the input file, i will have a...

Hello Yafeng/Deqms It's working for me now. My mistake was in this step: protein.matrix = as.matrix(df[,2:8]) Thank you very much On Tue, Sep 13, 2022 at 9:27 PM yafeng ***@***.***>...

Hello RalfG I solved the problem associated with line 35, it seems it was because of a special character. But now I am getting this error : Adding DeepLC-derived features...

I installed the last release and it was solved the multiple modifications per site error. However, now I am getting this error: Error occurred: index -3 is out of bounds...

Hello Ralf Follow the information ``` Reading PSMs from PSM file (1/1): 'C:/Users/ofm83/OneDrive/Documents/Sericopelma_sp/PeptideShaker/Sericopelma_sp.mzid'... Removed 0 PSMs with rank >= 10. Found 11699 PSMs, of which 15.46% are decoys. Non-mapped modifications...

Hello again I think that I solved the problem but now I am getting the following error: # Sequence Data: seqnum=7183;seqlen=1258;seqhdr="k127_3767 flag=1 multi=3.0000 len=1258" # Model Data: version=Prodigal.v2.6.3;run_type=Metagenomic;model="48|Xylella_fastidiosa_Temecula1|B|51.8|11|1";gc_cont=51.80;transl_table=11;uses_sd=1 >1_83_418_+ >2_749_1246_-...

Ok. Thank you very much. When I get the warnings the prediction output file is empty it only contains the column headers. Does this mean that no AMPs were found?

OK. Thank you very much On Mon, Sep 9, 2024 at 2:34 AM Luis Pedro Coelho ***@***.***> wrote: > Yes, none were found > > — > Reply to this...