uberon
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obophenotype
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Apologies if this is duplicative, I see issues for individual patterns, but not an over-arching obe regenerated: https://github.com/INCATools/owl_patternizer/tree/master/examples/uberon usual caveats apply about auto-gen results
We should have a generic "fin fold" class. Note that neither TAO nor ZFA have this. ext inherits a fairly minimal set of logical axioms from TAO: ``` [Term] id:...
### Remaining tasks - [x] UBERON:4x series in > UBERON:4x --> mixed, I think this is a small enough subset to look over quickly and add TCs. There will be...
Right now, if the branch is behind master, the diff runs wild: https://github.com/obophenotype/uberon/pull/2481 I think we need to merge master into the branch just before running diff.
Current strategy to make a taxon subset: - Add axiom Thing subClassOf part-of some NCBITaxon:nnnn - Remove any inter-species existentials - homology represented as reciprocal existentials - inter-species edges (less...
**Comment**: The following terms are requested to indicate the origin of the tissues to establish cell lines annotated in Cellosaurus. Many thanks _____________________________________________________________________________________________________________ **Preferred term label:** skin of breast **Synonyms**...
_Anatomical cluster_ is defined as a type of anatomical group (specifically, "Anatomical group that has its parts adjacent to one another."). However, it is not a subclass of _anatomical group_;...
In Uberon, `tendon` is textually defined as “dense regular connective tissue that connects muscle to bone”, and is a subclass of `connects some 'muscle organ'`. Several individual tendon classes do...
Develops from property chain removal (https://github.com/obophenotype/uberon/pull/1808) caused a lot of useful axioms to not be there. While the removal was to solve some weird axioms @balhoff found, some of the...
Now that we have the upper and lower tooth patterns done, I have made a csv for all the teeth terms I'd like to add / revise. I am curious...
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An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology