uberon

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`subsets/life-stages-composite.obo` is incomplete

2

The `life-stages-composite` is generated using this `owltools` command: ```bash subsets/life-stages-composite.owl: composite-metazoan.owl $(OWLTOOLS) $< --reasoner-query -r elk -l 'life cycle stage' --make-ontology-from-results $(URIBASE)/uberon/$@ --add-ontology-annotation $(DC)/description "Life cycle stage subset of uberon...

anitacaron

NTR: cranial arteries

1

**Preferred term label:** cranial arteries **Synonyms** set of arteries of head cranial blood arteries **Definition (free text, please give PubMed ID)** Arteries that is part of a head **Parent term...

LCCarmody

Remove external_ontology_notes from Edinger-Westphal nucleus

2

Related to https://github.com/obophenotype/uberon/issues/2658#issuecomment-1253655781

shawntanzk

Edinger-Westphal nucleus should be in the oculomotor nuclear complex

3

From Maryann Martone (@memartone) I’ve been working a lot with UBERON for the SPARC project, and came across this note for the Edinger-Westphal nucleus http://purl.obolibrary.org/obo/UBERON_0002141: NIFSTD places this in oculomotor...

shawntanzk

Polysemy: NV. Demote synonymity to RELATED in UBERON:2005093

2

This PR tries to resolve the 4 of 4 of issues mentioned in #2424 The issue also blocks QC PR #2640 The problem that is addressed here is that *...

vasvir

Cross Term Label-Synonym Violation QC

1

This PR detects synonym-synonym and label-synonym across different Terms (UBERON Ids). Another implementation (but with the same logic and functionality) of this check was used to detect and fix (merged)...

vasvir

Add teat and teat skin

4

Fixes #2353 Questions/notes: - are nipple and teat in historical or serial homology? (I assume historical but wanted to check) -> have not added this relationship yet - currently there...

shawntanzk

NTR: semitendinosus tendon

2

**Comment:** The following term is needed to indicate the origin of the tissues used establish cell lines annotated in Cellosaurus. Many thanks **Preferred term label:** semitendinosus tendon **Synonyms** tendon of...

paulacalipho

Fix problematic relation URIs

4

There are several problematic URIs for relationships defined in UBERON: ``` URI number of edges with this URI http://purl.obolibrary.org/obo/uberon/core#proximally_connected_to 27 http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into 16 http://purl.obolibrary.org/obo/uberon/core#channel_for 16 http://purl.obolibrary.org/obo/uberon/core#distally_connected_to 13 http://purl.obolibrary.org/obo/uberon/core#channels_into 7 http://purl.obolibrary.org/obo/uberon/core#channels_from 6...

cthoyt

Obsolete `aggregate regional part of brain`

5

on reflection, this is a poor grouping class: ```yaml id: UBERON:0010009 name: aggregate regional part of brain def: "A regional part of brain consisting of multiple brain regions that are...

anitacaron