Add teat and teat skin

[shawntanzk]

Fixes #2353

Questions/notes:

• are nipple and teat in historical or serial homology? (I assume historical but wanted to check) -> have not added this relationship yet
• currently there isnt any taxon restrictions, would like to have one, but have left it as a editors note for now

Tagging @ddooley & @stheil15

[github-actions[bot]]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-09-13/uberon-simple.owl
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-09-13/uberon-simple.owl
• Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

UBERON_8440078 http://purl.obolibrary.org/obo/UBERON_8440078

Added

• UBERON_8440078 has_obo_namespace "uberon"

• UBERON_8440078 id "UBERON:8440078"

• UBERON_8440078 contributor 0000-0001-7258-9596

• UBERON_8440078 definition "The projection from the mammary glands of mammals from which milk flows or is ejected for the purpose of feeding young. As compared to a nipple, where the individual lactiferous ducts open directly to the outside world, a teat has lactiferous ducts that converge on a large lactiferous sac at the base of the teat and there is a single, large duct that runs through the teat with an outlet at the end of the teat."

  • database_cross_reference "WikipediaVersioned:Teat&oldid=1107850923"

  • database_cross_reference "https://orcid.org/0000-0002-1572-1316"

• UBERON_8440078 see also "https://github.com/obophenotype/uberon/issues/2353"

• UBERON_8440078 editor note "Taxon restriction should be added on this term when possible."

• UBERON_8440078 label "teat"

• UBERON_8440078 comment "While many lay sources treat nipple and teat as synonyms, mammalogists do not."

  • database_cross_reference "https://orcid.org/0000-0002-1572-1316"

• Class: UBERON_8440078

• UBERON_8440078 SubClassOf organism subdivision

UBERON_8440079 http://purl.obolibrary.org/obo/UBERON_8440079

Added

• UBERON_8440079 contributor 0000-0001-7258-9596

• UBERON_8440079 label "teat skin"

• UBERON_8440079 definition "The skin that is part of the teat."

  • database_cross_reference "https://orcid.org/0000-0001-7258-9596"

• UBERON_8440079 id "UBERON:8440079"

• UBERON_8440079 see also "https://github.com/obophenotype/uberon/issues/2353"

• UBERON_8440079 has_obo_namespace "uberon"

• Class: UBERON_8440079

• UBERON_8440079 SubClassOf skin epidermis

• UBERON_8440079 SubClassOf part_of some UBERON_8440078

[github-actions[bot]]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

UBERON_8440078 http://purl.obolibrary.org/obo/UBERON_8440078

Added

• UBERON_8440078 has_obo_namespace "uberon"^^string

• UBERON_8440078 id "UBERON:8440078"^^string

• UBERON_8440078 contributor 0000-0001-7258-9596

• UBERON_8440078 definition "The projection from the mammary glands of mammals from which milk flows or is ejected for the purpose of feeding young. As compared to a nipple, where the individual lactiferous ducts open directly to the outside world, a teat has lactiferous ducts that converge on a large lactiferous sac at the base of the teat and there is a single, large duct that runs through the teat with an outlet at the end of the teat."^^string

  • database_cross_reference "https://orcid.org/0000-0002-1572-1316"^^string

  • database_cross_reference "WikipediaVersioned:Teat&oldid=1107850923"^^string

• UBERON_8440078 see also "https://github.com/obophenotype/uberon/issues/2353"^^string

• UBERON_8440078 editor note "Taxon restriction should be added on this term when possible."^^string

• UBERON_8440078 label "teat"^^string

• UBERON_8440078 comment "While many lay sources treat nipple and teat as synonyms, mammalogists do not."^^string

  • database_cross_reference "https://orcid.org/0000-0002-1572-1316"^^string

• Class: UBERON_8440078

• UBERON_8440078 SubClassOf organism subdivision

UBERON_8440079 http://purl.obolibrary.org/obo/UBERON_8440079

Added

• UBERON_8440079 contributor 0000-0001-7258-9596

• UBERON_8440079 has_obo_namespace "uberon"^^string

• UBERON_8440079 label "teat skin"^^string

• UBERON_8440079 definition "The skin that is part of the teat."^^string

  • database_cross_reference "https://orcid.org/0000-0001-7258-9596"^^string

• UBERON_8440079 id "UBERON:8440079"^^string

• UBERON_8440079 see also "https://github.com/obophenotype/uberon/issues/2353"^^string

• Class: UBERON_8440079

• UBERON_8440079 EquivalentTo skin epidermis and (part_of some UBERON_8440078)

[shawntanzk]

Does the use case justify it? Or is this really just a matter of giving people their own terminology?

@stheil15 & @ddooley - could you help with this please

[ddooley]

Over to you @stheil15 !