Ollie White

Hello, I would like to create my own error model. In the example below, should reads_R1.fastq.gz and reads_R2.fastq.gz be quality filtered prior to mapping? Best wishes Ollie ``` bowtie2-build genomes.fasta...

GetOrganelle tool

31

Hello, I have tried to create an .xml wrapper for GetOrganelle https://github.com/Kinggerm/GetOrganelle. I think this is a useful tool and it would be great if it was widely accessible on...

Hello, I have tried to write an xml for the following script https://raw.githubusercontent.com/Kinggerm/PersonalUtilities/master/get_annotated_regions_from_gb.py It is used to create a seed fasta file in the correct format to be used by...

Genmap map genome/chromsome size limit

2

Hello, Is there a genome or chromosome size limit with Genmap map? I am trying to run genmap map for a 48GBp krill genome and I am getting an error....