Ollie White

Hi @bernt-matthias I understand now, yes I had installed the get organelle seed databses locally. Are the seed databases large enough to be problematic for usage on galaxy? Regarding the...

Hi @bernt-matthias Apologies for my slow reply on this. I have added output filters for the advanced settings and the inf option for --reduce-reads-for-coverage. However, I have tested the .xml...

Hi @bernt-matthias and @bgruening Thanks both for the comments, pleased this is making progress. I upgraded the version to 1.7.6.1 > And it seems that the authors provided a minimal...

Hi @bernt-matthias Thanks again for the additional details. If I understand correctly, the discussion at the end of https://github.com/Kinggerm/GetOrganelle/issues/64 refers to the seed and label database used to generate the...

Hi @bernt-matthias and @Kinggerm, Thanks both for the comments. I have used the small input data set and seed/label databases as suggested. I made the aditional scripts required and my...

Hello @bernt-matthias and @bgruening, Thanks both for the feedback and apologies for the delay in getting back to you. I have made the following changes: - added a ```getorganelle.loc.sample``` file...

 I tried to test the tool in my local galaxy but it cannot find the reference data. I am assuming this is something that needs to be set up...

Hello again, I upated the main xml to include the macro as suggested. I tried to remove the column for type from ```test-data/getorganelle.loc```, ```tool_data_table_conf.xml.sample``` and ```tool_data_table_conf.xml.test``` but when I did,...

Hi @bernt-matthias, Thanks for the suggestions, I made the changes and moved ```getorganelle.loc.sample``` to a directory called ```tools-data```. But when I test the tool using planemo I get the same...

> Remove the filter .. its removing all options that do not have the text getorganelle in the 3rd column. Thanks @bernt-matthias this fixed the issue, I accepted all suggested...