Johan Nylander

Results 14 issues of Johan Nylander

Hi, I tried compiling the source following the [instructions for Ubuntu 14.04](https://github.com/rrwick/Bandage#building-from-source) on Ubuntu 18.04 (gcc version 7.3.0), but fail due to (what I understand) a bug on the Ubuntu...

Hi, Thank you for providing your useful tools. There is a minor issue with the documentation (output from `-h`) in the script `catInterleaveFastq.sh`: The usage instructions says ``` USAGE catInterleaveFastq.sh...

From Daniel Ayres: "I'm passing on this debugging challenge to your group. I've determined that the issue the colleagues working with CIPRES have encountered relates to the covarion model. The...

Note to self: Do a pull request after updating the mrbayes recepie over at bioconda:

after next release

Consider utilizing more of the already available commands for `make`. Perhaps (no particular priority order): - `make uninstall` - `make dist` - `make dist-gzip` - `make install-man`

I have made the changes accordingly, please re-review, will do the release note later. _Originally posted by @zhangchicool in https://github.com/NBISweden/MrBayes/pull/128#issuecomment-554876404_

Add function for check min memory requirements after loading data. Similar to the `Check_Memory_Amount` function in PhyML (in [https://github.com/stephaneguindon/phyml/blob/master/src/utilities.c](https://github.com/stephaneguindon/phyml/blob/master/src/utilities.c)). This function will halt the run if the required memory is...

enhancement

Allow longer input-filename argument than 99 characters. Noticing this the other day in class where students used the very convenient "drag-n-drop" functionality to specify the full path to the input...

enhancement

- Last modified: Fri Feb 01, 2019 10:46AM - Sign: JN ## Description: Running mb.3.2.7 + beagle3 (GPU) crashes on Ubuntu 18.04. Trying to reproduce, and debug at the moment....

bug
MPI-related

Trying to read large files (with very long lines, see issue #109), the user sees the error message "Maximum allowed length of a token is 99990". It would be more...

enhancement