Nastassia Patin

Insert size peak 35 bp

12

I have several metagenomes that were sequenced the same way (same Illumina platform, same adapters). Some of them are showing an insert size peak of 35 bp. I have tried...

segmentation fault

12

I am receiving a "segmentation fault" error when I try to run DEICODE auto-rpca. I've tried running it both in QIIME2 and standalone, with the standalone as the most recent...

I am trying to retrieve NCBI taxids for all genomes in a particular phylum. It seems that downstream() only works for one level below the given taxid, so I wrote...

Hello, I downloaded the full PR2 database as a fasta file (" pr2_version_5.0.0_SSU_taxo_long.fasta") which according to the website is suitable for making a local BLAST database. However, when I run...

Discrepancy between metadata search results & piped fetch results

4

I am trying to download a set of samples based on metadata information. When I search with my parameters, I find a certain number of samples; but when I pipe...