Nicolas Vannieuwkerke

I'll give it a go in a couple of days :eyes:

Hi no I haven't been able to get the conda recipe to work yet :/

Hi I've finally managed to get it working and using the same command and file posted in the first message of this issue results in the error in this file:...

Thank you!

Indeed! It fully works now except for that warning, but that's not a breaking issue right now. Thanks for the help!

It seems related to the parallelization of the tool. If I run it with only one thread, the tool works fine

Working on it! :p

I personally do agree that the `ext.args` method could be improved (especially concerning defaults stated by the pipeline developer etc). But I'm not sure this solution is the best since...

Can you share your Dockerfile and command used @boyanboyue? Along with any specifications of the system your are trying to run this on (operating system, docker version...)

Hi thank you for the thorough explanation. First of all can I suggest to add all those commands to you Dockerfile and create a container image like that? That way...