Nezar Abdennur

Thanks for reporting, Joachim! Would you mind sharing the file (privately on Slack if you like), so I can investigate?

There is no CLI tool for this yet, but it's a just a few lines of Python to copy bin table columns between files, assuming the bin tables are aligned....

Yeah, pairix is likely not supported on Windows. However, you don't need it to use cooler (unless you are loading pairix-indexed pairs). Can you make sure the remaining [dependencies](https://github.com/open2c/cooler/blob/master/requirements.txt) are...

Because the internal structure of the file is chromosome order sensitive, it does require exporting and reloading data. For a single cooler, a simple bash one-liner can reorder chromosomes: ```bash...

Simplest example: http://higlass.io/l/?d=YwFgTeDHRrWWO6_Syq-n0w 

definitely affects  Also the thumbnails generated by pyppeteer seem to have this issue, and they are generated by a headless chromium!

Indeed, I can't reproduce this now on Windows or Mac (though I could swear I had seen it on one of them before). So it could be linux-specific, though the...

Tracked it down on Firefox to a GL feature disabled by default on X11 systems: https://wiki.mozilla.org/Blocklisting/Blocked_Graphics_Drivers#On_X11 ``` GL layers acceleration is not yet enabled by default (see bug 594876). You...

FYI, the actual feature that in question is [GPU-accelerated layer compositing](https://cialu.net/how-to-turn-on-accelerated-compositing-layers-on-firefox/). Solution: Enter `about:config` in Firefox's URL bar and set `layers.acceleration.force-enabled` to `true`. However, when I tried it, it seemed...

Does the browser try to redirect you to `http://MyIP/admin`? You might need to add a trailing slash `http://MyIP:8989/admin/` to prevent that.