Nezar Abdennur

Sigh. I just remembered, there is no exposed API to set the host name before the local server starts, so this only works if you are port forwarding your jupyter...

Can you confirm that that path and the resolutions in the file can be accessed without errors from your notebook if you point `cooler` to it. e.g. ```python import cooler...

I think you're version of cooler is old and out of sync with pandas. Try `pip install -U cooler`.

> I find I need to keep an integer chrom_id column so that things sort in the desirable chr1, chr2, ... chr9, chr10, ... way. We use dictionary encoding for...

Thanks for the feedback. This is coming in the next release, with additional customization features. Stay tuned!

Please take a look! You can now access all info and call data and with a new API: https://oxbow.readthedocs.io/en/latest/getting-started/quickstart.html The legacy `read_*` functions are still available too.

Closing this as resolved. Please re-open if you encounter issues accessing sample call data.

I encountered occasional deadlock writing via pybigtools, assuming it's the same underlying issue: https://gist.github.com/nvictus/dbb318b2941f006863af2ad63d7ab839 I haven't reproduced it recently, but i'll send a more minimal example once I do.

This begs the question of whether to support a full histogram interface, where you can define your bins by a sequence of edge points. By analogy to [numpy.hist](https://numpy.org/doc/2.1/reference/generated/numpy.histogram.html), though I'm...