nukaemon

I think SvABA expects the bwa index files to be named as suffixed in a strict way, that is, genome.fa.amb, genome.fa.ann, genome.fa.bwt, genome.fa.pac, and genome.fa.sa if the file given to...

I also encountered with this problem and I confirmed that, as already mentioned above, the peak was determined based on reads counts(the number shown in "count" column of each sample...