Nicola Soranzo

@gregvonkuster I use `git reset --hard ` after the `git clone` .

Tests are failing with `wtdbg2: invalid option -- 'Y'`

This can be of interest to @gmauro , which has been working on Galaxy-Omero integration for many years.

On my CentOS box, `zcat` is provided by `gzip` RPM, similarly on my Ubuntu desktop. Unfortunately there's no `gzip` package in our Conda channels.

@jmchilton @guerler I saw this problem a few times previously, it's bit annoying that for an integer/float `param` you have to define `value=""` even if there's no default value, can...

Not having `optional="true"` just means that the **user** must fill this value to be able to run the tool, not that there's a default value known to the tool developer....

@guerler Awesome, thanks!

@bgruening report will be filled only if trim_galore succeeds, as `` is written now.

A problem we've had with tbl2asn for [Prokka wrapper](https://bitbucket.org/crs4/orione-tools/src/HEAD/custom/prokka/) is that the binary is versioned internally, but the file is just overwritten on the FTP without changing its name. Moreover,...

@bgruening I'm not working on Prokka at the moment, it's in the hand of CRS4 people. You may try to do a pull request, but they are not using tool_dependencies.xml...