PALS
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npnl
Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs
Bumps [ipython](https://github.com/ipython/ipython) from 7.27.0 to 8.10.0. Commits 15ea1ed release 8.10.0 560ad10 DOC: Update what's new for 8.10 (#13939) 7557ade DOC: Update what's new for 8.10 385d693 Merge pull request from...
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Bumps [certifi](https://github.com/certifi/python-certifi) from 2021.5.30 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...
Bumps [pillow](https://github.com/python-pillow/Pillow) from 9.0.0 to 9.3.0. Release notes Sourced from pillow's releases. 9.3.0 https://pillow.readthedocs.io/en/stable/releasenotes/9.3.0.html Changes Initialize libtiff buffer when saving #6699 [@radarhere] Limit SAMPLESPERPIXEL to avoid runtime DOS #6700 [@wiredfool]...
Bumps [lxml](https://github.com/lxml/lxml) from 4.6.5 to 4.9.1. Changelog Sourced from lxml's changelog. 4.9.1 (2022-07-01) Bugs fixed A crash was resolved when using iterwalk() (or canonicalize()) after parsing certain incorrect input. Note...
Bumps [numpy](https://github.com/numpy/numpy) from 1.21 to 1.22.0. Release notes Sourced from numpy's releases. v1.22.0 NumPy 1.22.0 Release Notes NumPy 1.22.0 is a big release featuring the work of 153 contributors spread...
gather_csv is currently Python-only. Needs CLI like the main workflow.
Re-running with the same settings, except for a change in ROI results in overwriting the output csv. Maybe a --merge_csv flag?
File output path patterns are defined at node creation and are not available outside the workflow definition; extensions that do post-processing (e.g. to gather .csv files) don't have access to...
White matter segmentation is needed for the lesion mask correction, but there is no option for users to supply white matter segmentation.