ggkegg
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noriakis
Analyzing and visualizing KEGG information using the grammar of graphics
Since ggkegg uses the kgml files for extracting metadata, would it would be possible to save the rendered images as svg with the relevant information used for coloring?
Hi! Thanks for developing this package. I would like to recreate the module completeness heatmap in your documentation [here](https://noriakis.github.io/software/ggkegg/module.html) using my own results of kegg mapper. I have lists of...
Hello, Thank you very much for creating such a great package for us to use. Before this, we could only draw manually with AI. When I try to use the...
When I specify directory as "/xxxx/yyy/zz", the downloaded KGML files are not stored in the designated directory.
Hi, thanks for developing the package. It is of great help to me. However, I run into the bug. The code report error after I run the example data: `rm(list...
The use of Edge-Path bundling could be useful in investigating the gene relationships within KEGG PATHWAY. Using `edgebundle` (or the other implementation?), a wrapper function for plotting a pathway, colored...
Hi, I want to show metabolic pathway in KEGG and then I want to highlight line of the subpathway rather than the module. Is it possible to do that using...
Hi, I have found this to be very interesting and played with some data. I'm wondering if I have a list of genes from DEA analysis and the KEGG Ortholog...
Hi, i found the function `overlay_raw_map` can't use dowloaded png file in `directory`，i must download file each time.
I am interested in using the module abundance component of ggkegg but am not clear how this is calculated, can you provide any further explanation? How do the values input...
