Martino

Despite using different CUDA_VISIBLE_DEVICE values, I'm getting different executions pushed to the same GPU (explains @RichardCorbett's issue). Using `CUDA_VISIBLE_DEVICES=0 /opt/bonito-0.3.2/bin/bonito basecaller dna_r9.4.1 1 > 1.fastq ` fixed it (note the...

Wonderful! I'll give'er a spin on my NVLink-less system and report back. Beats the heck out of splitting fast5s into n batches.

We manually remove the erroneous entries. Not an ideal solution. > On Apr 24, 2023, at 8:51 AM, xue-222 ***@***.***> wrote: > > > Did you solve the problem? >...

same error here, from command line

I was running CUDA version 10.2 When updating via the ONT debian repo, this warning pops up: `The following packages have unmet dependencies: ont-guppy : Depends: libcuda-11.1-1 or libcuda1 (>=...

It should work ok. There may be some slight issue with classification probabilities resulting from a non poly(rA) sequence after the barcode, but I think this will be negligible given...

You may need to segment the data a priori, e.g. by running python3 deeplexicon.py dmux This will split the signal to separate the barcodes from the RNA. Then train on...

Has anyone actually tried running it on RNA004 data? The main chemical difference is the motor protein. Since it uses the same pore as RNA002 (albeit it may have been...