Toan Phung

An sdrf-related function I use in my software a lot is reordering of sdrf columns based on an array of selected schema. It would be beneficial to have this ability...

Is ontology URL not supported for characteristics[organism]?

1

Hi, I am testing validating of SDRF-proteomics file and in the official documentation for SDRF (https://github.com/bigbio/proteomics-sample-metadata/tree/master/sdrf-proteomics) it was mentioned that > Ontology url (Computer readable): Users can provide the corresponding...

Currently, there are inconsistencies in a few of the project annotation sdrf files to represent the expectation of the updated 1.0.0 in the upcoming major release referred to here https://github.com/bigbio/sdrf-pipelines/pull/219...

SDRF validator service and validated proof

1

This has been discussed and one of the suggestion for this service is a hosted SDRF validator service that anyone can use to validate their SDRF and it also provides...

Assay name column should be unique

16

Update specifications for guidance on naming syntax for assay name column to ensure that all values within the column is unique. Update the examples and annotated SDRF files to ensure...

Adding method for guessing closest schema beyond minimum for validation

1

Adding a method for scoring how close is an sdrf table is to all schemas beyond minimum that can be used to auto-match and validate. This would involve adding a...