Narciso Martin Quijada

Thanks for sharing the conda environment configuration that worked for your report generation Brad! Your point "2." is the same ggtree installation as included in `tormes-setup` script: https://github.com/nmquijada/tormes/blob/f5a547020f4d6cf562930f327799070bcf42cedc/bin/version-1.3.0/tormes-setup#L36 So, it...

Hi @shlomobl I am afraid that in the current version of tormes, only custom nucleotide databases for gene search are possible as an integrated option. We have included the chance...

Hi @shlomobl Sorry for the late reply. Both doing a BLAST or adding the proteins to the annotation files for the analyses are straightforward processes. However, from the latter you...

Hi! It looks that your tormes config_file.txt is missing. Did you run ```tormes-setup``` after installing tormes with conda? We are transitioning tormes to version 1.3.0, that will (hopely) be ready...

Hi again, We just released the v1.3.0 of TORMES :) Would you mind to uninstall your former version and try out the new one? For doing so: ``` #UNINSTALLING conda...

Hi @mglubber You are definitely right. We will correct this behaviour in the next release. Really thanks for notifying this! All the best, Narciso

Hi, @diegommartinezr , Sorry for the late reply. I decided to move your issue to a new one so we don't mix between users. I have never tried tormes in...

Hi @dkarig , Glad that you are using tormes! Let's see if we can solve the issues... 1. Regarding the report, tormes tries to automatically generate one after running. However,...

Dear Torsten Seemann, We have being trying to contact you regarding the TORMES project and manuscript since July 2017, willing for your collaboration. However, we did not got any answer....

Yes. Modifications have been applied to the documentation and a modified version of the manuscript has been forwarded to the journal's editors. The manuscript is still in the online version...