Narciso Martin Quijada

Hi Vincenzo, Good that you are learning! I am sorry I still did not get the clue... You are running incompatibility issues with this mauve again... So the thing is...

Hi Vincenzo, Thanks a lot for sharing all the error files. I will consider all the issues here for a next release of tormes, where I should consider other alternatives...

Dear @shlomobl Are those fastq files from different samples? Were they performed by paired-end sequencing (regardless the Illumina platform)?

Hi Shlomo, If I understood well, you have several forward (R1) and reverse (R2) reads fastq files for the same organism. In such situations, you can merge all the forward...

Hi Narges, Sure! That is the purpose of the metadata file: that you can have as many samples as you want by specifying the locations to the R1 and R2...

Dear Narges, Happy to read that! Do not hesitate to reach out if you have further queries ;) Best, Narciso

Hi, Yes, the report file ("tormes_report.html") should have been created in the tormes directory if everything run well. Can you please check the "tormes.log" in case something went wrong? Thanks!

Dear @Stigimoloch As @biobrad said, it seems that you have a problem with permissions. Do you have permissions from the directory where you run tormes and where you set the...

Hi @galstriker First of all, in order to check that TORMES is working properly despite MEGAHIT, can you run the same analysis by using SPAdes as assembler instead? (enable the...

Hi @galstriker Good that TORMES worked by using SPAdes. Let's see your report problem. Can you please share the "tormes_report.Rmd" file? It would be inside the "report_files" directory, so first...