Nick Waters

This is peripherally related (apologies if this is derailing the main issue!), but this would be great to have for containerizing workflows as well. I work on a shared HPC...

This might be related to https://github.com/snakemake/snakemake/pull/1588. I'm running snakemake 7.8.3 and singularity 3.7.1, btw.

I have the same issue, with ~1300 samples; will try subsampling...

I don't have anything to add other than enthusiasm! A faster, more parsible mpileup would be huge, I'm surprised there aren't more comments here!

Hi @zamaudio, That's totally fine, I get not wanting to mix languages in the code base. If I knew enough C++, I would totally recode it using the API you...

Hey @zamaudio, you are right, it doesn't, and I'm not sure how to get around that. Is there a way to get the relative starts times?? I ended up manually...

@20k-ultra yes, thank you, edited above for clarity!

@ChristopherHX thank you for your comment. The in the workflow works as intended, the issue only occurs in `--dryrun` mode presumably due to empty argument to `fromJson`. A new mode...

The fix in #1350 works for my purposes, and I like having everything in a single file. Kind of documents what is expected from a step as well, which is...

I may be using this wrong but I got the following: ``` act -n panic: runtime error: slice bounds out of range [:-1] [recovered] panic: runtime error: slice bounds out...