Nils Homer
Nils Homer
Internally, the `identity` method has a different implementation than the edit or adjacency methods. It's much simpler and likely faster. I can see how it could be confusing that there...
I can see a PR in the future with both the doc update and having `--identity` override `--edits`
Sounds like a useful feature. Thanks for the suggestion!
Caveat: we're always happy to review PRs, though I want to be fully transparent we are 100% client focused at this time, so there may be delays in reviewing. Feel...
> For supplementary & secondary reads - agreed it would be ideal to handle those, rather than force filtering them. Given the current behaviour ( filtering all of them when...
Closing this issue in favor of #961 since that's the only remaining issue. See also #940 for the main PR.
Can you post the full JSON? Also, can you point me to where it lives on FTP? I don't see it here: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/
Perhaps a short term solution is to transform the above into the current required input format, that way we don't have to update the tool.
I think this would be useful, so leaving this open for now