Nils Homer
Nils Homer
In many cases, we want to iterate over all bases in a FASTA, for example when looking for repeats, STRs, and other genomic features. Currently, this requires reading a contig...
I wanted to use rayon to parallelize some of my processing, but found that I need to have the [`Send + Sync`](https://doc.rust-lang.org/nomicon/send-and-sync.html) traits for key structs, like a Bed record...
See: http://www.htslib.org/doc/bgzip.html. This should not be too hard if you keep the uncompressed and compressed byte offset of each block you are processing. Right now, I have to use `bgzip`...
Related to #13. Impossible you say? See: http://www.hicomb.org/papers/HICOMB2019-07.pdf
I was trying to figure out from the docs how to support custom types (even `pathlib`'s `Path`) as well as python's [type hints](https://docs.python.org/3/library/typing.html). Any pointers would be very appreciated. For...
@lihaoyi I am trying to get autowire to work. My url is `http://0.0.0.0:8000/service/v1/dagr/api/DagrApi/query`, body is ``` { "name" : "task" } ``` and the stacktrace (server-site) is ``` [ERROR] [06/29/2017...
For example, if we set the `JAVA_TOOL_OPTIONS` environment variable ``` export JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF8 ``` then the first line is not the version: ``` $ java -version Picked up JAVA_TOOL_OPTIONS: -Dfile.encoding=UTF8 openjdk...
## New feature I would like to have the DSL2 support specifying the channels for processes and workflows via keywords. Some workflows I've written require many channels (5, 10, even...
I would like the option to ignore any `conda` directive with `nextflow run -stub .`. I want rapid feedback on the plumbing and data flow of my pipelines, and don't...
Uses sse2neon to convert Intel SSE intrinsics to Arm/Aarch64 NEON intrinsics. See: https://github.com/DLTcollab/sse2neon