Nils Homer

Great find! You can totally expand on that function versus having to roll your own!

Thanks @msto. Given the limited time we're spending developing fgbio, this one will likely go unworked on. I am not sure it's even possible with `scalfmt`. But I am glad...

@prot-devin I think this is a really interesting idea. We take inspiration from [Smith et al](http://doi.org/10.1101/gr.209601.116) to do the grouping, which does not have a way of quantifying the "confidence...

I was thinking of a phred-scaled probability of reads in the set being from different molecules. We would not only use the reads in the set, but other reads in...

Is it clearer on the command line to have `None` or `os.devnull`? What does `defopt` think?

Used python 3.11 and snakemake 8.27.1. Downgraded to 8.14.0 and it worked

What version of Java are you using? Could you try a different version of Java? I don't think this is related to the tool itself. Do you have others within...

@jmd5596 you may try installing a different version (e.g. with conda) of openjdk and see if that resolves it? In my experience, this error is due to the Java version...

There is definitely something wrong in your environment: https://stackoverflow.com/questions/22489398/unsupported-major-minor-version-52-0 Unfortunately, due to doing this on a volunteer basis, we are unable to help further. Could you seek out help on...

This option will only apply to duplex consensus reads in the file. Single strand consensus in the same file are not affected.