Nils Homer

NB: I see `-without-docker` and `-without-podman`, so I am hoping for a `-without-conda`.

I wouldn't be opposed to the best practice solution to be (1) moving the `conda` directive out of each process definition, then (2) specifying a `conda` profile where the per-process...

Why do we prefer nullable versus optional? The latter could have type Option. Which is more idiomatic of something that is optional? Also, nullable is less intuitive to folks who...

What if it just uses a .dict file by default when present? while .hdr is more flexible, .dict files are already in use.

Are there types of lines that should be disallowed? In (1), it looks like the intention is that the file should live statically alongside the other bwa files. So RG,...

Closing in favor of #348 (more flexible) and in the hopes that this increases the chances the latter is merged!

My 2C is if I request more reads than exist, it should output the input. I have pipelines where I downsample after adapter trimming so I want to sure ensure...

@lh3 thank-you! I'd echo John's call for a new release so we can bump it on conda for the ARM folks of the world to use. I don't think it's...

Closing as now #359 has been merged. Thanks @jmarshall!

@DerrickWood also interest on this end.