Nils Homer

@lh3 challenge accepted, I'll send you a real world dataset where this can happen!

@lh3 I was wondering if you received the dataset of which I am speaking. I believe it would be a novel application of fermi-lite, where we aren't assembling a genome,...

I'd love to have things properly typed (eg. `Path`).

Does nextflow inspect the object for members of type `Path` and localize already?

If I pass in a `SampleData` class in the script, the `r1` ``` process foo { input: val sample // Type: SampleData path fasta output: ??? script: """ bwa mem...

Still relevant, here’s what I do: ```groovy import groovy.transform.Immutable import nextflow.io.ValueObject import nextflow.util.KryoHelper @ValueObject @Immutable(copyWith=true, knownImmutables = ['path']) class Metadata { static { // Register this class with the Kryo...

@Emiller88 not in one I can share publicly, happy to help with a small hello world example.

I was offering, but it’s not high on my list.

1. `KryoHelper` is part of nextflow, so no need to include it other than the import at the top of the custom class groovy file (yes, put the custom groovy...

@ryankelley-lm if you use a path it will work just fine for local paths. I’m not sure how or if remote files will work.