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Migrate `CANU` to nf-test

2

## PR checklist Closes #7542 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

LouisLeNezet

Approved pipelines fail using test data using `test,docker`

3

A number of "Approved" pipelines in `nf-core/pipelines` fail. These are pipelines run using Nextflow 24.10.5 using the following: ``` nextflow run nf-core/ -r -profile test,docker --outdir test ``` The "Approved"...

danwiththeplan

jen-reeve

jen-reeve

jen-reeve

DSL1 > DSL2 migration

6

A number of "Approved" pipelines in `nf-core/pipelines` can only run using Nextflow 22.10.x: ``` Nextflow DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x...

danwiththeplan

update module: RTGTOOLS/ROCPLOT

1

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

jen-reeve

update module: RTGTOOLS/FORMAT

1

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

jen-reeve

update module: RTGTOOLS/PEDFILTER

1

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

jen-reeve

update module: RTGTOOLS/VCFEVAL

1

### Is there an existing module for this? - [x] I have searched for the existing module ### Is there an open PR for this? - [x] I have searched...

jen-reeve