nextflow
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nextflow-io
A DSL for data-driven computational pipelines
## Bug report When using the publishDir directive to send outputs to an s3 location, it looks like Nextflow creates a zero-sized object with a key ending in a slash...
# Feature Request: Allowing the Use of Local Secrets with AWS Batch in Nextflow ## Summary A Feature request from a Seqera Platform user > Nextflow "secrets" not working with...
## New feature There is already a feature in the azure batch plugin that will allow node pool allocation failures to be retried. This works if a failure, e.g. a...
## New feature It would be helpful to be able to set the `cache` directive via a closure. ## Usage scenario It would be sometimes helpful to force a re-run...
In a rush to get it done, we didn't include full unit tests for the Azure Managed Identity (#4897). We should increase the code coverage around Azure authentication to include:...
### Discussed in https://github.com/nextflow-io/nextflow/discussions/4814 Originally posted by **VasLem** March 13, 2024 I have the following process: ``` process readFromDirectory { input: path sample_dir val sample_name output: tuple val(sample_name), path("output/*.*") script:...
Nextflow provides built-in support for Conda package manager to setup the task environment. However, Conda can be considerably slow in resolving the package dependencies, for this reason alternative tools such...
## New feature Helllo. I could not find in the documentation a variable that hold the number of GPUs used by the process,. The closest i could find is this...
It should be possible to generate a "stub" script from the process outputs, since the purpose of the stub is essentially to generate some empty output files that match the...
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A DSL for data-driven computational pipelines