nextflow

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Nextflow does not respect the process.machineType in Google Batch, it always creates n2d-standard-2 to run the process.

5

## Bug report Nextflow does not respect the process.machineType, process.cpu, or process.memory specified in the process section of config in Google Batch, always creates n2d-standard-2 to run the process. ###...

qup9

add docs about methods of GroupKey objects

1

## Bug report This is not a bug report per se. It is mainly a request to add more docs about the GroupKey object. ### Expected behavior and actual behavior...

bguo068

## Bug report Nextflow build with dependencies (`nextflow-*-all`) fails when `which` is not installed, but reported message points to issues with dependency download. ### Expected behavior and actual behavior Error...

pradkowski

Add unwrap option to groupTuple

1

Close #4104 and #4637 I would prefer to be aggressive here and unwrap the group key by default because it will almost always be the desired behavior. But I will...

bentsherman

## Bug report (Please follow this template replacing the text between parentheses with the requested information) ``` The operation couldn’t be completed. Unable to locate a Java Runtime. Please visit...

jason-seqera

## Bug report This is a small thing, but the error messages from multiline error messages are not aligned correctly when printed. ### Expected behavior and actual behavior The expectation...

mahesh-panchal

## Improvement Currently, the Nextflow `publishDir` [directive](https://www.nextflow.io/docs/latest/process.html#publishdir) allows users to publish workflow files into a specific folder in cloud storage and (for Amazon S3 only _as of writing_) associate custom...

robnewman

Allow the concurrent run of multiple pipeline revisions

33

### Summary Nextflow relies on built-in integration with Git to pull and run a workflow. When the user specifies the Git repository URL on then run command line, Nextflow carry...

pditommaso

Unable to initialize nextflow environment

3

CAPSULE EXCEPTION: Error resolving dependencies. while processing attribute Allow-Snapshots: false (for stack trace, run with -Dcapsule.log=verbose) Unable to initialize nextflow environment

summersohot

Wrong parameter values are applied when having parameter dependencies and using a custom config file

2

## Bug report ### Expected behavior and actual behavior Given the order of priority of configuration sources (as documented [here](https://www.nextflow.io/docs/edge/config.html#configuration-file)), a parameter defined in a config file provided using the...

ramdayan