Qi Bao
Qi Bao
i want to know where is /opt/hap.py/bin/hap.py
Sorry sir, I just get the hap.py_latest.sif after using 'singularity pull docker://pkrusche/hap.py'. i don't get the hap.py under path '/opt'. could u tell me detailed explanation? thanks u very much.
> It is a path inside the singularity container. Singularity executes this binary inside the container. You just need the sif file. Everyting else is inside the sif file. Nothing...
add -T will cause this problem, but i don't know how to solve it
Could u solve this probleam?
> ## ERROR > `Exception: Different padding base for REF and ALT at NC_030811.1:2998385` > > ## vcf > ``` > NC_030811.1 2998385 MantaDEL:28854:0:0:0:0:0 CTGTGT C > ``` > >...
could u solve this bug?****
sorry, How to simulate the benchmarked variants in .fastq.gz
> Hello, although I am now able to run giraffe in an array job. The mapping speed is still very slow ~ 80 reads / per second per thread. >...
Maybe I found the reason. when i use real short-read data, there is no problem happen. but when i use simulated data, waring would happen.