treetime

treetime copied to clipboard

Feature: Extend ARG functionality to MultiTreeKnit

1

rneher

MissingDataError: ERROR: Cannot read metadata:

3

Hi. Hope you're all ok. I'm using treetime on google colaboratory and installed just like the tutorial. I've tried de .tsv and .csv file but it ends the same way...

aliciapm7

Dear Devs, I hope that you are well. I am using TreeTime (v 0.11.3), installed with `conda install bioconda::treetime`. I am using the ancestral sequence reconstruction (with VCF files) command,...

LewisCEMason

Question about branch length in mugration

1

Hello TreeTime team, I've been using TreeTime to reconstruct ancestral states across different branches of a phylogenetic tree, and I've encountered an issue that I wanted to bring to your...

Tonny-zhou

TreeTimeUnknownError: Error: Unexpected behavior detected in multiply function when determining peak of function with y-values '[]'.

6

[treetime_issue.tar.gz](https://github.com/neherlab/treetime/files/14650034/treetime_issue.tar.gz) Hi, I ran TreeTime with 8 different combination of parameters and got normal outputs from 4 of them but failed to do so in the left ones. For the...

bacterpang

Documentation on CLI function 'clock' is wrong. Date has to be date format not year decimal.

2

Documentation on CLI function 'clock' is wrong. Date has to be date format not year decimal see below:  I could not get the function to work unless I used...

m-d-grunnill